Skip to content

Add RFM (River Flow Model of Diseases) to registry - #127

Open
cmungall wants to merge 1 commit into
mainfrom
cmungall/add-rfm
Open

cmungall wants to merge 1 commit into
mainfrom
cmungall/add-rfm

Conversation

@cmungall

@cmungall cmungall commented Nov 6, 2026

Copy link
Copy Markdown
Collaborator

Registers the Hozo-based River Flow Model of Diseases ontology (http://rfm.hozo.jp/ontology/RFM.owl; Mizoguchi, Kozaki et al., ICBO 2011/2012) as rfm.

  • The source is OWL/XML, which rdftab can't parse, so build_command runs robot convert to produce RDF/XML.
  • Entity IRIs resolve against the file's xml:base (http://rfm.hozo.jp/ontology/owl/RFM.owl#), which is mapped to the RFM prefix. The file's declared default prefix (.../ontology/RFM.owl#) is not what entities actually use.
  • ontologies.Makefile, prefixes_local.csv, prefixes.csv regenerated.

Built locally end-to-end (make db/rfm.db): 67 classes, 78 subclass axioms, all entities contract to RFM: CURIEs (e.g. RFM:disease, RFM:abnormal_state).

🤖 Generated with Claude Code

Registers the Hozo-based River Flow Model ontology from
http://rfm.hozo.jp/ontology/RFM.owl (Mizoguchi, Kozaki et al., ICBO
2011/2012). The source is OWL/XML, so it is converted with robot before
rdftab loads it. Entity IRIs resolve against the xml:base
http://rfm.hozo.jp/ontology/owl/RFM.owl#, which is mapped to the RFM prefix.

Built end-to-end: 67 classes, 78 subclass axioms, all entities contract
to RFM: CURIEs. ontologies.Makefile and prefix CSVs regenerated.

Co-Authored-By: Claude Opus 5.5 <[email protected]>
@claude

claude Bot commented Nov 6, 2026 •

Copy link
Copy Markdown

Claude encountered an error —— View job


I'll analyze this and get back to you.

This branch has not been deployed

No deployments
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

1 participant