Skip to content
@theislab

Theis Lab

Theis Lab at Institute of Computational Biology, Helmholtz Munich

Pinned Loading

  1. single-cell-best-practices single-cell-best-practices Public

    https://www.sc-best-practices.org

    Jupyter Notebook 1.3k 281

  2. scvelo scvelo Public

    RNA Velocity generalized through dynamical modeling

    Python 515 119

  3. scarches scarches Public

    Reference mapping for single-cell genomics

    Jupyter Notebook 414 74

  4. scib scib Public

    Benchmarking analysis of data integration tools

    Python 436 79

  5. ehrapy ehrapy Public

    Electronic Health Record Analysis with Python.

    Python 374 55

  6. moscot moscot Public

    Multi-omic single-cell optimal transport tools

    Python 220 16

Repositories

Showing 10 of 280 repositories
  • ReconEval Public

    Benchmarking for gene expression from single cell latent representations

    theislab/ReconEval's past year of commit activity
    Jupyter Notebook 22 MIT 3 1 1 Updated Nov 13, 2026
  • embpy Public
    theislab/embpy's past year of commit activity
    Python 23 MIT 2 9 2 Updated Nov 13, 2026
  • cellucid-datasets Public

    Cellucid demo datasets. Real single-cell data, one click from exploring.

    theislab/cellucid-datasets's past year of commit activity
    JavaScript 0 0 0 0 Updated Nov 13, 2026
  • spatialdata-db-client Public
    theislab/spatialdata-db-client's past year of commit activity
    Python 3 BSD-3-Clause 0 2 1 Updated Nov 13, 2026
  • cellucid-python Public

    Cellucid for Python. From AnnData to millions of cells in your browser, in one command.

    theislab/cellucid-python's past year of commit activity
    Python 3 BSD-3-Clause 0 0 0 Updated Nov 13, 2026
  • cellucid-demo-custom-datasets Public

    Cellucid custom datasets. Publish your data on GitHub, open it anywhere.

    theislab/cellucid-demo-custom-datasets's past year of commit activity
    Python 0 BSD-3-Clause 0 0 0 Updated Nov 13, 2026
  • cellucid-annotation Public template

    Cellucid community annotation. From clusters to consensus, together on GitHub.

    theislab/cellucid-annotation's past year of commit activity
    Python 0 BSD-3-Clause 0 0 0 Updated Nov 13, 2026
  • cellucid-r Public

    Cellucid for R. From Seurat to millions of cells in your browser, in one command.

    theislab/cellucid-r's past year of commit activity
    R 0 0 0 0 Updated Nov 13, 2026
  • cellucid Public

    See every cell. Query any gene. Fly through millions, right in your browser.

    theislab/cellucid's past year of commit activity
    JavaScript 9 BSD-3-Clause 0 0 0 Updated Nov 13, 2026
  • gh-dashboard Public

    A dashboard of everything in the theislab GitHub repository

    theislab/gh-dashboard's past year of commit activity
    HTML 8 0 1 0 Updated Nov 13, 2026
View all repositories